Iowa Department of Natural Resources Proposed Administrative Consent OrderCity of Dubuque
City Council
ACTION ITEMS # 11.
Copyrighted
August 18, 2025
ITEM TITLE: Iowa Department of Natural Resources Proposed
Administrative Consent Order
SUMMARY: City Manager recommending City Council approve the
proposed Administrative Consent Order received from the
Iowa Department of Natural Resources (IDNR) that pertains
to effluent permit violations between January 1, 2020, and
December 31, 2024 at the Water & Resource Recovery
Center (WRRC).
SUGGUESTED Receive and File; Approve
DISPOSITION:
ATTACHMENTS:
1. MVM Memo
2. Staff Memo
3. Dubuque ACO Proposed Final
4. Presentation_Uploaded 8.18.25
Page 540 of 579
Dubuque
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TO: The Honorable Mayor and City Council Members
FROM: Michael C. Van Milligen, City Manager
SUBJECT: Iowa Department of Natural Resources Proposed Administrative Consent
Order
DATE: August 13, 2025
Water & Resource Recovery Center Director Deron Muehring is providing information
related to the recommended Administrative Consent Order received from the Iowa
Department of Natural Resources (IDNR) that pertains to self -reported effluent permit
violations between January 1, 2020, and December 31, 2024, at the Water & Resource
Recovery Center (WRRC).
The WRRC is the City's wastewater treatment facility which holds a National Pollutant
Discharge Elimination System (NPDES) permit from the IDNR which authorizes the
discharge of treated wastewater into the Mississippi River. The permit requires the City
to meet more than 2,000 individual permit conditions at the WRRC each year, including
sampling, monitoring, and discharge limits to ensure the water returned to the
environment is safe and meets requirements.
A total of 72 permit violations were self -reported over the five-year period, with the
majority occurring in 2023 and 2024 during periods of facility disruption. The violations
stem from two main causes, both of which have been addressed:
• Biological instability in the treatment process beginning in 2022. This condition
has been stabilized for more than a year through enhanced monitoring, targeted
treatment, and modified process controls.
• A contractor error in Fall 2023 rendered the facility's boiler inoperable for several
weeks. This led to loss of digester performance and resulted in 33 violations.
An explosion at the facility in December 2024 related to third -party equipment, not City
infrastructure, damaged systems and contributed to additional permit violations.
The contractor error in 2023 and third -party equipment malfunction in 2024 caused or
contributed to 40 permit violations.
The IDNR's proposed administrative consent order and limited levy of $7,000 in total
administrative penalties acknowledges the challenges and opportunities the WRRC's
system has faced since 2023, as well as the ongoing work and funding the City has
Page 541 of 579
dedicated to its sanitary sewer collection system. Through the first half of 2025, the
WRRC has had only seven permit violations, all tied to a single day when sampling
levels were elevated, which was directly related to the December 2024 explosion —not
ongoing process issues.
The city has been actively working to reduce and minimize violations through
operational improvements, added staffing, and long-term planning. The city also started
early work on a developing a facility plan update for the WRRC to guide the next 20-30
years of treatment capacity, reliability, and odor control.
Within the last two years, the City has added a plant manager and industrial
pretreatment coordinator to the WRRC's staff to improve systems oversight and control
over what enters the facility. Both roles have helped identify and manage issues that
caused permit issues.
Additional investments to improve operations at the WRRC are planned. A $7.3 million
project to improve hauled high -strength waste is budgeted and under design and will be
ready for bidding in 2025. These improvements will be funded through fees charged to
the hauled waste generators/customers. Federal funding sources are being pursued to
help reduce costs to these local businesses. Also, later this summer, the City will go out
for bid on the first phase of a $3 million project to replace electrical controls at the
WRRC to replace existing infrastructure and prevent system failures.
The City has committed over $134 million in sanitary sewer collection and treatment
system improvements through FY2030. This includes the $43.4 million phases one and
two of the Old Mill Road Lift Station and Force Main Project that is already under
construction. These targeted investments in the sanitary sewer collection system will
reduce backups, eliminate bypasses, and support future growth. Improvements include
upgrades to lift stations, force mains, and key segments of the citywide gravity sewer
network.
Overall, the WRRC has generally operated in conformity with its NPDES permit, and the
permit violations that have occurred were primarily the result of specific, identifiable
events rather than systemic deficiencies. The City has responded to these incidents by
addressing root causes and has also taken proactive steps to prevent future violations —
both by mitigating the risk of unusual disruptions and by strengthening systems to guard
against broader, systemic issues.
The consent Decree says, "Iowa Code section 45513.109 authorizes the Commission to
establish by rule a schedule of administrative penalties up to $10,000 that may be
assessed administratively."
The Consent Decree further says, "Iowa Code section 455B.191 provides for penalties
of up to $5,000 per day for wastewater violations."
2
Page 542 of 579
While the Iowa Department of Natural Resources had the authority to assess higher
penalties the Consent Decree reads, "City shall pay an administrative penalty of $7,000
within 30 days of the effective date of this Order."
I respectfully recommend Mayor and City Council approval of the Administrative
Consent Decree.
Mic ael C. Van Milligen
MCVM:sv
Attachment
cc: Crenna Brumwell, City Attorney
Cori Burbach, Assistant City Manager
Deron Muehring, Water & Resource Recovery Center Director
Jason Lehman, Assistant City Attorney
Willie O'Brien, WRRC Plant Manager
3
Page 543 of 579
THE CITY OF
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TO: Michael Van Milligen, City Manager
FROM: Deron Muehring, Water & Resource Recovery Center Director
SUBJECT: Iowa Department of Natural Resources Proposed Administrative
Consent Order
DATE: July 17, 2025
INTRODUCTION
The purpose of this memo is to provide information related to the proposed Administrative
Consent Order received from the Iowa Department of Natural Resources (IDNR) that
pertains to effluent permit violations between January 1, 2020, and December 31, 2024
at the Water & Resource Recovery Center (WRRC). The memo provides context for the
violations and a summary of the City's actions to improve operations and ensure ongoing
compliance.
BACKGROUND
The WRRC is the City's regional wastewater treatment facility, operating under National
Pollutant Discharge Elimination System (NPDES) Permit #3126001 issued by the IDNR.
The WRRC receives a mix of domestic and industrial wastewater conveyed through the
City's sanitary sewer collection system, as well as high -strength waste delivered by truck
from local businesses. The facility treats this material using a combination of physical,
biological, and chemical processes that must perform reliably to consistently meet the
effluent limits established in the permit. Effluent is the treated water that flows out of the
wastewater treatment facility and is discharged to the environment. The WRRC
discharges to the Mississippi.
Since 2020, the City has self -reported 72 effluent permit violations through routine
Discharge Monitoring Reports (DMRs) submitted to the IDNR, in accordance with the
reporting requirements of the NPDES permit.
In Fiscal Year 2023, the City Council approved the addition of two new full-time positions.
The first was originally approved as an Assistant Water & Resource Recovery Center
Manager; however, the department was subsequently reorganized to establish the
WRRC Director (Department Manager) position and a new Plant Manager role. The Plant
Manager, responsible for overseeing day-to-day treatment system performance, was
filled in November 2023. The second position, Industrial Pretreatment Coordinator, was
filled in December 2023. This role is responsible for monitoring and managing waste
contributions from industrial users to ensure, as required by the U.S Environmental
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Protection Agency (EPA) and the IDNR, that they do not interfere with the City's ability to
collect and treat wastewater in compliance with its NPDES permit.
In 2023, the City retained a contractor to assist with a scheduled inspection of the boiler
responsible for maintaining temperatures in the anaerobic digesters. Inspection activities
began in October 2023. Following the inspection, the contractor failed to properly
reconnect the wiring. As a result, the boiler remained inoperable until mid -November, until
WRRC staff were able to diagnose the issue and ultimately identified the miswiring as the
cause of the failure. And even though the boiler was eventually restored to service in
November of 2023, the prolonged outage caused the digesters to lose temperature and
sour, significantly reducing their ability to process solids until the spring of 2024. The City
was forced to limit waste feed to the digesters, resulting in solids accumulation throughout
the system and elevated sludge blankets in the final clarifiers.
On December 4, 2024, an explosion occurred at the WRRC, causing an estimated $3.5
million in damage. The incident was not caused by City -owned infrastructure or result
from the actions of City personnel. It was caused by equipment owned, operated, and
maintained by a private company to further clean the methane gas produced at the WRRC
for use as Renewable Natural Gas (RNG).
The explosion disrupted electrical service to key solids handling systems, including
sludge thickening, digestion, and dewatering, requiring a ten-day suspension of normal
operations while power was safely restored. Over a million gallons of solids accumulated
in the system during this period, contributing to operational challenges and subsequent
effluent violations in April of 2025.
With the adoption of the Fiscal Year 2025 Capital Improvement Program (CIP) budget,
the City Council allocated funding to support an update to the WRRC Facility
Management Plan. This comprehensive planning effort will evaluate treatment processes,
solids handling, energy use, and system capacity to help prioritize future capital
investments and operational improvements. Following adoption of FY25 Budget
Amendment No. 1, a total of $465,000 has been allocated for the effort.
As part of the Fiscal Year 2025 (FY25) budget process, the City Council approved an
improvement package to support the long-term functionality and reliability of the Water &
Resource Recovery Center's solids handling system. Beginning in FY25 and continuing
into FY26 and beyond, the City has committed $75,000 annually to implement a rotating
cleaning schedule for the facility's four anaerobic digesters. This proactive measure
allows the WRRC to clean one digester each year, reducing the risk of buildup and system
inefficiencies while maintaining stable biological performance and preserving overall
treatment capacity.
On May 14, 2025, the City received a proposed Administrative Consent Order from the
Iowa Department of Natural Resources (IDNR). The proposed order reflected self -
reported NPDES effluent permit violations and IDNR-issued Notices of Violation (NOVs)
for the 5-year period starting on January 1, 2020 and running through December 31, 2024.
IDNR ACo 2
Page 545 of 579
DISCUSSION
The Water & Resource Recovery Center (WRRC) plays a critical role in protecting public
health, supporting economic activity, and safeguarding the environment in Dubuque and
the surrounding tri-state area. In addition to treating sanitary wastewater from homes and
businesses, the WRRC provides a regional service by accepting trucked high -strength
waste (HSW), such as grease from restaurants and septage from private systems. These
are materials that would otherwise burden the sewer system or require specialized
disposal at private facilities. As outlined in the WRRC mission statement, we are
committed to protecting the environment and public health through reliable, cost-effective
treatment of wastewater and resource recovery. We take seriously our role as the final
line of defense before pollutants reach the Mississippi River and work every day to
maintain the high level of treatment required by our National Pollutant Discharge
Elimination System (NPDES) permit.
While permit violations are tracked and reported to the IDNR, it is important to understand
that not every violation necessarily results in environmental harm. For example, when
setting effluent limits for ammonia in the WRRC's NPDES permit, the IDNR's water quality
modeling showed that the Mississippi River could assimilate ammonia concentrations up
to 105 mg/L in July without adverse impact. However, the WRRC's permit limit is set at
52 mg/L—well below the modeled environmental threshold. This approach adds a safety
factor to ensure water quality is protected but also means that not every exceedance of
a permit limit represents a direct risk to the river or the ecosystem. And one root cause of
a permit violation, such as the buildup of solids in the treatment system, can lead to
multiple violations across different parameters. For example, elevated solids can increase
Total Suspended Solids (TSS) effluent, which in turn contributes to higher Carbonaceous
Biochemical Oxygen Demand (CBODS), and diminished ultraviolet (UV) light penetration
needed for E. coli disinfection. These interrelated effects are typical in wastewater
operations, where a single disruption may result in a cluster of related permit violations.
Between January 1, 2020 and December 31, 2024, the WRRC self -reported 72 NPDES
permit violations through routine Discharge Monitoring Reports. To fully understand the
significance of this number, it is important to consider the operational complexity of the
WRRC and the nature of its permit. The WRRC collects hundreds of samples per year
across multiple permit parameters. Each parameter includes multiple reporting metrics
(e.g., daily maximum, weekly average, 30-day average), and each exceedance of any
one metric counts as a separate violation. In addition, many parameters are reported in
both concentration (mg/L) and total mass (pounds), meaning a single underlying issue —
such as elevated solids in the system —can result in multiple separate violations for the
same pollutant. These violations were not evenly distributed over the five-year period but
were concentrated primarily in the years 2022 through 2024, reflecting specific
operational challenges during that timeframe. The distribution is shown in Table 1 below.
IDNR ACo 3
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Table 1. Breakdown of Effluent Permit violations at the WRRC by year
Calendar
Year
Number of Effluent
Violations
2020
2
2021
7
2022
15
2023
28
2024
20
TOTAL
72
As shown in the table above, the bulk of the WRRC's effluent permit violations occurred
between 2022 and 2024. These were not the result of ongoing systemic issues but
stemmed from isolated disruptions such as the emergence of filamentous bacteria and a
temporary boiler failure that are discussed in more detail below. Each of these incidents
presented unique operational challenges that resulted in clusters of permit violations
during those specific years.
One significant contributor to permit violations during 2022 and 2023 was the emergence
of filamentous bacteria in the secondary treatment process. While filamentous organisms
are always present in activated sludge systems, changes in pollutant loading and
environmental conditions can cause them to proliferate and outcompete beneficial
bacteria. This impairs settling in the final clarifiers and increases turbidity, leading to
higher TSS and CBODS, as well as reduced UV disinfection effectiveness. The WRRC
had not previously experienced a filamentous overgrowth of this magnitude, and staff had
to quickly identify the bacterial species and determine an effective response. The team
conducted side -by -side testing of treatment basins, settled sludge samples, and UV
transmittance readings. Working with a wastewater microbiology lab, the WRRC
confirmed the species and began applying sodium hypochlorite (bleach) to the Return
Activated Sludge (RAS) line to suppress filamentous growth. Chlorination dosing was
carefully adjusted to avoid harming beneficial microbes. A third aeration basin was also
brought online to increase retention time, allowing healthier biological populations to
rebound. These efforts were ultimately successful and continue today as part of ongoing
process control.
A second major disruption occurred starting in late October 2023, when the WRRC
retained a contractor to assist with a proactive boiler inspection. The boiler is responsible
for maintaining temperature in the anaerobic digesters, which is critical for solids
stabilization. The contractor was tasked with disassembling the unit for inspection by a
state -certified boiler inspector and restoring it to service afterward. However, the
contractor failed to properly reconnect critical wiring during reassembly, rendering the
boiler inoperable until mid -November. Without heat, the digesters lost temperature and
"soured," severely impairing their biological treatment capacity. The City had to stop
feeding waste into the digesters, leading to solids accumulation throughout the treatment
system and elevated sludge blankets in the final clarifiers. The digesters did not fully
recover until spring 2024. This event directly contributed to several permit violations
related to solids and CBODS.
IDNR ACo 4
Page 547 of 579
Overall, the WRRC has generally operated in conformity with its NPDES permit, and the
permit violations that have occurred were primarily the result of specific, identifiable
events rather than systemic deficiencies. The City has responded to these incidents by
addressing root causes and has also taken proactive steps to prevent future violations —
both by mitigating the risk of unusual disruptions and by strengthening systems to guard
against broader, systemic issues.
Recognizing the need for tighter control of treatment operations and upstream waste
inputs, the City Council approved the addition of two new full-time positions in Fiscal Year
2023. First, the department was reorganized to create the WRRC Director position and a
dedicated Plant Manager role. The Plant Manager, hired in November 2023, is
responsible for daily oversight of treatment system performance and serves as the
facility's lead process expert.
The Plant Manager plays a proactive role —more akin to a physician monitoring a
patient —by tracking biological health metrics across the system. By evaluating data like
sludge volume index, mixed liquor suspended solids, UV transmittance, and ammonia
removal rates, the Plant Manager can detect subtle deviations in system performance
and respond quickly before they escalate into violations.
Second, an Industrial Pretreatment Coordinator was hired in December 2023 to
strengthen regulatory oversight of waste contributions from industrial users. This includes
both discharges to the collection system and high -strength hauled waste. They are
responsible for evaluating sampling data, tracking pollutant loadings, and enforcing
pretreatment requirements to prevent interference with WRRC processes. These two
roles are already producing measurable benefits in terms of permit violations, and their
impact is expected to grow as the programs mature.
The City is preparing to implement a Computerized Maintenance Management System
(CMMS). The WRRC relies on hundreds of interdependent assets —pumps, valves,
blowers, chemical feed systems, and treatment process controls —that must work in
concert to treat wastewater effectively. A CMMS will allow staff to schedule and track
preventive maintenance, monitor equipment condition over time, and generate work
orders for inspections, lubrication, calibration, and parts replacement. By proactively
addressing mechanical and operational issues before they escalate, the CMMS will
improve reliability and reduce the likelihood of equipment -related permit violations. It will
also support data -driven asset management, optimize maintenance staff time, and enable
more strategic capital planning.
To enhance the reliability and effectiveness of the WRRC's solids handling processes,
the City is implementing a strategy to clean each of the facility's four anaerobic digesters
on a rotating basis. This program, funded through an annual $75,000 improvement
package beginning in FY25, allows for one digester to be cleaned each year. Routine
cleaning is critical to removing accumulated inorganic materials —such as grit, debris, and
other non -biodegradable substances —that impair digestion efficiency and reduce
available treatment capacity. By maintaining optimal digester functionality, the WRRC can
better manage incoming solids and prevent system overloads that could otherwise lead
to elevated sludge blankets in the final clarifiers. Such conditions are known to cause
IDNR ACO 5
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violations of effluent permit limits for total suspended solids (TSS), carbonaceous
biochemical oxygen demand (CBOD), and, indirectly, reduced UV disinfection
performance. Although funding was allocated for this work in FY25, it was postponed due
to the December 2024 explosion and the extended recovery efforts that followed. This
targeted investment remains a priority and supports the City's broader effort to minimize
permit violations by ensuring stable and effective operation of the WRRC's biological
treatment system.
The City is also in the process of updating its Facility Plan for the WRRC. This plan,
developed in close coordination with regulatory agencies and engineering consultants,
serves as a comprehensive roadmap for future improvements to the treatment facility. It
evaluates current performance, regulatory trends, equipment condition, future loading
projections, and operational risks to prioritize investments over the next 20 years. The
updated Facility Plan will allow the City to strategically phase improvements to maximize
cost-effectiveness, support permit compliance, reduce the possibility of odors, and extend
the useful life of existing infrastructure. It also ensures that the WRRC remains well -
positioned to adapt to new regulatory requirements, emerging contaminants, and the
changing needs of the community.
The City is undertaking a series of significant infrastructure improvements at the WRRC
to address operational challenges, reduce the risk of permit violations, and improve the
long-term reliability of the treatment system. Several of these improvements are either in
the design phase or already funded, representing a substantial investment in the future
of the facility and the broader utility system.
First among these efforts is the $7.3 million High -Strength Waste (HSW) Receiving and
Storage Improvements Project. The WRRC receives and treats high -strength hauled
waste from industrial, commercial, and residential sources, including food processors,
restaurants, and septic haulers. These materials often have high organic loads and, if not
carefully managed, can upset treatment performance and contribute to violations. The
planned improvements include a new receiving station, enclosed storage tanks,
enhanced metering, and odor control systems. These upgrades will provide greater
control over the volume and characteristics of HSW introduced to the plant, allowing for
more consistent and predictable digestion performance.
Another is a $3 million investment in modernizing the WRRC's electrical control systems.
Many of the facility's electrical components —especially motor control centers,
programmable logic controllers (PLCs), and supervisory control and data acquisition
(SCADA) systems —are at the end of their useful life or no longer supported by
manufacturers. The new control system will improve real-time monitoring, increase
automation, and allow for faster operator response to emerging issues, all of which are
critical for maintaining compliance with effluent discharge standards.
These in -plant improvements are paralleled by investments in the City's sanitary sewer
collection system. Over the next five years, the City will invest approximately $130 million
in collection system improvements designed to reduce inflow and infiltration, eliminate
capacity constraints, and prevent bypasses and basement backups. The initial investment
is the $43.4 million Old Mill Road Lift Station and Force Main Project, which is currently
IDNR ACo 6
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under construction. This project will relieve pressure on the downstream Catfish Creek
Lift Station and interceptor, which currently serves a large portion of the City's south and
westerly growth areas. The planned improvements to the conveyance infrastructure will
improve capacity and address wet -weather vulnerabilities that can lead to bypasses and
overflows. By proactively investing in the reliability and resiliency of the collection system,
the City aims to reduce the frequency of peak flow events that strain the treatment plant
and can contribute to effluent permit violations.
Together, these efforts reflect the City's forward -looking strategy to improve treatment
reliability, enhance system resiliency, and protect water quality for years to come.
Whether focused on managing high -strength waste, modernizing electrical controls,
implementing preventive maintenance, or expanding collection system capacity, these
efforts directly support the overarching goal of minimizing effluent permit violations. While
the Administrative Consent Order (ACO) acknowledges past challenges, the actions
described above demonstrate that the City is already taking meaningful steps to address
the root causes of permit violations. These investments position the WRRC and the City
to meet both current and future regulatory obligations while continuing to protect public
health and the Mississippi River.
The proposed ACO reflects five years of self -reported permit violations and includes a
one-time administrative penalty. However, aside from the financial penalty, the ACO does
not require the City to take any actions beyond what is already mandated in its existing
NPDES permit and the City's ongoing Consent Decree obligations with the U.S.
Department of Justice. Under Iowa law, the DNR may assess penalties of up to $5,000
per day, per violation. The ACO acknowledges that many of Dubuque's violations resulted
from exceptional incidents beyond the City's control —such as the contractor -caused
boiler outage or the December 2024 explosion. The ACO represents an opportunity to
bring closure to the past five years and recognizes the City's efforts to minimize effluent
permit violations going forward.
So far in 2025, the WRRC has recorded seven effluent permit violations, all from a single
day in April when staff attempted to process the excess solids that had accumulated
following the explosion. Excluding this one -day occurrence, the WRRC has not had any
effluent limit violations in 2025.
ACTION REQUESTED
This memo is intended to provide information relating to the proposed Administrative
Consent Order with the Iowa Department of Natural Resources.
CC: Crenna Brumwell, City Attorney
Jason Lehman, Assistant City Attorney
Willie O'Brien, WRRC Plant Manager
IDNR ACO 7
Page 550 of 579
IOWA DEPARTMENT OF NATURAL RESOURCES
ADMINISTRATIVE CONSENT ORDER
IN THE MATTER OF:
The City of Dubuque, Iowa
NPDES permit no. 3126001
To: City of Dubuque
c/o Crenna Brumwell
50 W 13th St.
Dubuque, IA 52001
ADMINISTRATIVE CONSENT
ORDER
No. 2025-WW-
Re: Failure to comply with terms of NPDES permit and Stormwater permit.
1. SUMMARY
This Administrative Consent Order is entered into between the Iowa Department
of Natural Resources (DNR) and the City of Dubuque, Iowa to resolve violations of Iowa
wastewater law. The City of Dubuque shall take the corrective actions listed below and
pay an administrative penalty of $7,000.
Relating to technical requirements:
Michele Smith, Env. Specialist Sr.
DNR Field Office no. 1
11o1 Commercial Court, Ste 1o,
Manchester, IA 52057
Phone: (563) 927-264o ext. 3o8
Payment of penalty to:
Director of the Iowa DNR
6200 Park Ave., Ste. 200
Des Moines, Iowa 50321
Relating to legal requirements:
Bradley Adams
Attorney for the DNR
6200 Park Ave., Ste. 200
Des Moines, IA 50321
Phone: (515) 664-8894
Page 551 of 579
IOWA DEPARTMENT OF NATURAL RESOURCES
ADMINISTRATIVE CONSENT ORDER
ISSUED TO: THE CITY OF DUBUQUE, IOWA
2. JURISDICTION
This Order is issued pursuant to Iowa Code section 455B. 175(1), which
authorizes the Director to issue any order necessary to secure compliance with or
prevent a violation of Iowa Code chapter 455B, Division III, Part 1 and the rules adopted
or permits issued pursuant thereto; and Iowa Code section 455B• log and 567 Iowa
Administrative Code (IAC) chapter 1o, which authorize the Director to assess
administrative penalties.
3. STATEMENT OF FACTS
The City of Dubuque (the City) is the oldest city in the state of Iowa, chartered in
1837 situated overlooking the Mississippi River. Its topography is that of bluffs
stretching down to flats at the river.
2. The City owns and operates an activated sludge plant with UV disinfection (the
facility), which treats wastewater from local industries, residents, commercial
businesses, and similar waste products from surrounding areas in Dubuque
County. The facility accepts and treats hauled high -strength waste (HSW) from
local industries, providing a vital service to the region by treating the waste
though a publicly regulated system.
3. Each month the City submits a Discharge Monitoring Report (DMR) to the Iowa
Department of Natural Resources (DNR) Field Office 1 (F01), which documents
all monitoring results, including any violations of effluent limits.
4. The City's NPDES permit identifies multiple bypass outfalls at six specific lift
stations. These are engineered to prevent damage to the lift stations when the wet
well floods resulting from excessive flows to the lift stations or a mechanical
failure. The inclusion of the bypass outfalls in the permit reflects regulatory
acknowledgment of their existence and function.
5. On November 1, 2019, the DNR issued the City National Pollutant Discharge
Elimination System (NPDES) permit no. 3126001, which included effluent
limitations for E. Coli, Ammonia, TSS, and CBOD5.1
6. On October 14, 2022, DNR Field Office 1(FO 1) Environmental Specialist Sr.
Amber Sauser performed a routine compliance inspection at the facility.
7. That same day, FO 1 issued a Notice of Violation (NOV) to the City for treatment
system bypasses, deficiencies related to the sludge management plan, deficiencies
in biosolids annual reporting, and deficiencies in toxicity sampling. The NOV
listed a number of corrective actions and set a response deadline for each action
listed by November 15, 2022.
Page 552 of 579
IOWA DEPARTMENT OF NATURAL RESOURCES
ADMINISTRATIVE CONSENT ORDER
ISSUED TO: THE CITY OF DUBUQUE, IOWA
8. On November 1, 2022, DNR issued the City amended NPDES permit no.
3126001. The permit was amended to remove the Nutrient Reduction
Requirements page and to replace it with an updated Nutrient Reduction
Requirements page that would require a new feasibility study in five years.
9. On January 18, 2023, the City approved the creation of an Industrial
Pretreatment Coordinator. The position was filled in December, 2023.
10. On February 2, 2023, FO 1 issued an NOV to the City for a failure to meet its TSS
and CBOD5 effluent limitations for the violations reported in August, September,
October, November, and December of 2022.
11. On March 24, 2023, the City approved funding to create an Assistant Water &
Resource Recovery Center Manager. The position, retitled as Water & Resource
Recovery Center Plant Manager, was filled in November of 2023.
12. On April 21, 2023, FO 1 issued the City an NOV for a failure to meet its TSS
limitations for the violation reported in February of 2023.
13. In the fall of 2023, the City retained a contractor to perform a scheduled
inspection of the boiler system, which maintains the temperature in the facility's
anaerobic digesters. Inspection activities began on October 23, 2023.
14. Following October 23, 2023 inspection, the contractor failed to properly
reconnect critical wiring, rendering the boiler inoperable until November lo,
2023, causing unintentional and temporary noncompliance with technology -
based effluent limits. The City posits that this incident was beyond its reasonable
control, and was not the result of operational mistakes, poor facility design,
inadequate maintenance, or careless operation.
15. As a result of the inoperable boiler, the digesters lost temperature and soured,
significantly reducing their treatment capacity. The City was required to limit the
feeding of waste to the digesters, leading to solids accumulating in the system and
elevated sludge blankets in the final clarifiers. These conditions contributed,
either wholly or in part, to 33 effluent permit violations beginning in late October
2023. Recovery of digester performance took several months, with normal
operation restored in June of 2024.
16. On February 1, 2024, FO 1 issued an NOV to the City for a failure to meet its TSS
and CBOD5 effluent limitations.
17. On February 27, 2024, DNR approved the renewal of the City's coverage under
NPDES General Permit no. 1 (GP 1). Among other items, GP 1 requires the
implementation of a stormwater pollution prevention plan (SWPPP).
Page 553 of 579
IOWA DEPARTMENT OF NATURAL RESOURCES
ADMINISTRATIVE CONSENT ORDER
ISSUED TO: THE CITY OF DUBUQUE, IOWA
18. On April 30, 2024, FO 1 issued an NOV to the City for failure to meet its TSS and
CBOD5 effluent limitations for the violations reported in January, February, and
March of 2024.
19. On November 5, 2024, FO 1 issued an NOV to the City for failure to meet its TSS,
E. Coli, Ammonia, and CBOD5 effluent limitations for the violations reported in
April, May, July, and September of 2024.
20. On November 19, 2024, DNR FO 1 Environmental Specialist Sr. Michele Smith
performed a stormwater and wastewater inspection at the facility.
21. On December 4, 2024, an explosion occurred at the WRRC causing an estimated
$3.5 million in damage. The incident was not caused by city -owned infrastructure
or the actions of city personnel.
22. The result of the explosion was an exceptional incident that caused unintentional
and temporary noncompliance with technology -based effluent limits due to
factors beyond the reasonable control of the City. Post explosion, the electrical
service to the solids handling system was disrupted, including systems
supporting sludge thickening, digestions, and dewatering. This forced the City to
suspend normal solids processing operations for ten days while power was safely
restored. During this time, solids accumulated in the treatment process,
contributing to operational challenges and subsequent effluent violations. The
noncompliance with permit effluent limitations was not the result of operational
mistakes, poor facility design, inadequate maintenance, or careless operation by
the City. As of the effective date of this order, the City is in the process of
restoring the facility to pre -explosion conditions in cooperation with investigators
and inspectors, both public and private.
23. On December 4, 2024, FO 1 issued an NOV to the City for not having a valid
SWPPP and not retaining records in accordance with the terms of GP 1.
24. On December 13, 2024, FO 1 issued an NOV to the City for failure to meet its E.
Coli, TSS, and Ammonia effluent limitations for the violations reported in
October of 2022, and; February, July, August, and November of 2023.
25. On January 5, 2025, the City hired a qualified consultant to assist in updating the
SWPPP. The updated SWPPP was scheduled for completion by March 31, 2025,
in accordance with the terms of the agreement.
26. On January 16, 2025, FO 1 issued an NOV to the City for failure to meet its E. Coli
effluent limitations for the violations reported in November of 2024.
27. On March 26, 2025, the City submitted the completed and signed SWPPP to F01
wherein the City committed to implementation of the SWPPP provisions and
compliance with applicable requirements of GP1, including staff training and
performing routine inspections.
Page 554 of 579
IOWA DEPARTMENT OF NATURAL RESOURCES
ADMINISTRATIVE CONSENT ORDER
ISSUED TO: THE CITY OF DUBUQUE, IOWA
28. The City has performed the following acts to provide its wastewater treatment
system and staff the resources needed to achieve compliance following the events
outlined above:
a. From FY 2023 to 2025, the City has increased rates by nine percent, six
percent, and nine percent respectively. The rate increases account for the
costs associated with new positions, programs, operating, and capital
improvement expenditures.
b. During FY 2026 to 2030, the City has budgeted $92,378,623 in funding
dedicated to sanitary sewer extensions and system improvements. Including
carryovers from prior years, the City has committed $134,2o6,288 toward
sanitary sewer system improvements.
c. Since 2022, the City has committed $40,530,5o8.82 to the repair and/or
replacement of collection system components.
4. CONCLUSIONS OF LAW
29. Iowa Code section 455B.186 prohibits the discharge of pollutants into waters of
the state, except for adequately treated pollutants discharged pursuant to a
permit.
30. Iowa Code section 455B.173(3) authorizes and requires the Environmental
Protection Commission (Commission) to promulgate rules relating to the
operation of waste disposal systems, the discharge of pollutants into waters of the
state, and the issuance of permits to waste disposal systems. The Commission has
done so at 567 IAC 6o through 69.
31. 567 IAC 64.3(1) states that "no person shall operate any wastewater disposal
system... contrary to any condition of an operation permit issued by the director."
32. 567 IAC 64.6 specifies the conditions that are to be included in a permit,
including applicable effluent limitations as established in Chapters 61 and 62 of
the rules.
33• 567 IAC 64.7(4)(e) states that "if a permittee fails ... to comply with an interim or
final requirement in an NPDES permit such noncompliance shall constitute a
violation of the permit for which the director may ... suspend or revoke the permit
or take direct enforcement action."
34• 567 IAC 63.6(1) states that "bypasses from any portion of a treatment facility or
from a sanitary sewer collection system designed to carry only sewage are
prohibited."
35• Part III(C) of NPDES GP 1 requires facilities under its coverage to prepare and
implement a stormwater pollution prevention plan.
Page 555 of 579
IOWA DEPARTMENT OF NATURAL RESOURCES
ADMINISTRATIVE CONSENT ORDER
ISSUED TO: THE CITY OF DUBUQUE, IOWA
The above -stated facts establish violations of these provisions.
5. ORDER
Therefore, the DNR orders, and the City agrees to the following:
The City shall comply with all NPDES permit effluent limits.
2. The City shall continue to comply with the terms of its existing Consent Decree
between the City and the U.S. Environmental Protection Agency (EPA) related to
the elimination of sanitary sewer overflows (SSOs) and bypasses, including all
requirements for system evaluation, rehabilitation, and reporting intended to
address deficiencies in the collection system. The City provides semi-annual
reports to the EPA on the progress related to the Consent Decree. The Iowa DNR
shall be added as recipients on the semi-annual reporting. The semi-annual
reports shall be provided to the following individuals, on behalf of the Iowa DNR:
Michelle Smith, Environmental Specialist Senior
michelle.smith@dnr.iowa.gov
Bradley Adams, Attorney 2
bradley.adams@dnr.iowa.gov
If the City becomes aware that these individuals are unable to receive the
aforementioned semi-annual report on behalf of the DNR, then the City shall
submit the semi-annual report to an appropriate DNR representative.
3. The City shall pay an administrative penalty of $7,000 within 3o days of the
effective date of this Order.
6. ADMINISTRATIVE PENALTY
1. Iowa Code section 455B.log authorizes the Commission to establish by rule a
schedule of administrative penalties up to $1o,000 that may be assessed
administratively. The Commission has adopted this schedule with procedures
authorizing the Director to assess administrative penalties at 567 IAC 1o.
2. Iowa Code section 455B.191 provides for penalties of up to $5,000 per day for
wastewater violations.
3• 567 IAC 10 establishes the criteria that the DNR must consider in determining
whether an administrative penalty is warranted, and if so, how much the penalty
should be. The general categories for consideration are the economic benefit of
the alleged non-compliance by the violator, the gravity of the alleged violation,
and the culpability of the violator. Pursuant to this chapter, the DNR has
determined that the most effective and efficient means of addressing the above
cited violations is the issuance of an administrative consent order with an
Page 556 of 579
IOWA DEPARTMENT OF NATURAL RESOURCES
ADMINISTRATIVE CONSENT ORDER
ISSUED TO: THE CITY OF DUBUQUE, IOWA
administrative penalty of $7,000.00. The administrative penalty assessed by this
Order is determined as follows:
a. Economic Benefit: 567 IAC chapter 10 requires that the DNR consider the costs
saved or that were likely to be saved by noncompliance. 567 IAC 10.30(1) states
that "where a violator realizes an economic benefit through the violation or by not
taking timely compliance or corrective measures, the department shall take
enforcement action which includes penalties to offset the economic benefit." 567
IAC 10.30(1) further states, "reasonable estimates of economic benefit should be
made where clear data are not available."
Dubuque has struggled with managing high strength hauled waste for many
years, which has resulted in the periodic overloading of the facility's anerobic
digester system. Overloading the digesters with high strength organic waste has
been linked to the propagation of filamentous bacteria that negatively impacts
the overall activated sludge treatment process, causing effluent violations. The
City has identified high strength waste receiving and storage as an operational
priority. Upgrades to this portion of the facility are currently in the design phase.
However, this project should have been completed several years ago, thereby
delaying the costs associated with this capital investment.
As such, $2,000 is assessed for this factor.
b. Gravity of the Violations: Elements to consider when determining the gravity of a
violation include the actual or threatened harm to the environment or public
health and safety, and whether the violation threatens the integrity of the
regulatory program.
The City exceeded its permit's effluent limits approximately 72 times dating back
to January of 2020, including two consecutive quarters of significant non-
compliance for TSS in 2022/2023 and two consecutive quarters of significant
non-compliance for TSS and CBOD5 in 2023/2024. Failure to comply with
NPDES effluent limits degrades water quality in Iowa's surface waters. This
harms aquatic life, prevents the attainment of water quality goals, and limits the
Department's ability to deliver its mission for the citizens of Iowa. Furthermore,
noncompliance with an NPDES permit thwarts the integrity of the state's water
quality program. The facility's collection system also experienced repeated
bypasses and basement backups, resulting in the release of untreated wastewater
to the environment and within residential homes.
As such, $4,000 is assessed for this factor.
c. Culpability: The factors to be considered in determining the culpability of the
violator include the degree of intent or negligence of the violator, whether the
case involves false reporting of required information and whether the violator has
taken remedial measures to address the harm caused by the violations.
Page 557 of 579
IOWA DEPARTMENT OF NATURAL RESOURCES
ADMINISTRATIVE CONSENT ORDER
ISSUED TO: THE CITY OF DUBUQUE, IOWA
Dubuque owns and operates a major wastewater treatment plant. This highly
regulated activity obligates the City to be aware of the applicable regulations and
to comply with those regulations. The Department has repeatedly communicated
the need for the City to comply with its NPDES permit. Even so, over 70
unauthorized discharges have occurred.
As such, $1,000 is assessed for this factor.
7. APPEAL RIGHTS
As this Order is entered by consent of the parties, there is no right of appeal.
8. NONCOMPLIANCE WITH THIS ORDER
Failure to comply with any requirement of this Order may result in the
imposition of further administrative penalties or referral to the Iowa Attorney General
to obtain injunctive relief and/or civil penalties.
Kayla Lyon, Director
Iowa Department of Natural Resources
2025.
Bra(!-Cava,4ast0veayor Month Day
Iowa DNR Administrative Consent Order
— Context & Path Forward —
City of Dubuque — Water & Resource Recovery Center
August 18, 2025
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What is the
WRRC?
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• Regional wastewater treatment for
Dubuque & surrounding communities
• Handles domestic, industrial, and
hauled high -strength waste
• Discharges to Mississippi River under
strict NPDES permit
• Over 2,000 individual permit
conditions checked each year
Why Are We Here Today?
• May 2025: IDNR issued proposed
Administrative Consent Order
• Covers 72 self -reported effluent permit
violations (Jan 2020 — Dec 2024)
• Goal: Provide context, explain causes, and
share solutions
How Effluent Permit Violations Are
Counted...
Effluent is the water discharged from the
facility following treatment
• Each effluent parameter has multiple
metrics (e.g., mg/L, lbs/day, 24-hour max,
7-day avg, monthly avg, etc.)
• One incident can trigger multiple effluent
permit violations for the same pollutant
The Numbers in Context
• 72 effluent permit violations - 1% of ^'7,000
compliance checks over 5 year period
• Most in 2022-2024 during specific
operational disruptions
• Not related to systemic operational failure
How They're All Connected
• Elevated solids � higher TSS
• Higher TSS -> higher CBOD5
• Higher TSS 4 reduced UV penetration 4
E. coli exceedance
• One root cause = multiple effluent permit
violations
Timeline of Events
• 2020-2021: 9 effluent permit violations —
isolated issues
• 2022: Filamentous bacteria emergence
• Nov 2023: Boiler outage — contractor wiring
error
• Dec 2024: Explosion from third -party RNG
equipment
Filamentous Bacteria (2022-2023)
• Present in all wastewater systems; normally thrive in low -
strength waste
• In Dubuque's case, waste strength was high, causing rapid
filamentous growth
• All microbes break down waste, but filamentous types:
• - Do not settle out well in clarifiers
•-Morelikelytopassintofinaleffluent
• Result: Elevated solids -> TSS, CBOD5i and E. coli effluent
permit violations
• Controlled through species identification, targeted
chlorination, and process adjustments
2023 Boiler Outage
• Proactively scheduled state- and insurance -required boiler
inspection
• Contractor failed to reconnect wiring after inspection
• Boiler offline N3 weeks -> digesters lost temperature and
"soured"
• Reduced solids processing -> solids accumulated in system
• Led to TSS, CBOD5, and E. coli effluent permit violations
• Cause: Third -party contractor error — City pursuing damages
December 2024 Explosion
• Caused by third -party Renewable Natural Gas
(RNG) equipment
• Not related to City -owned systems or staff
actions
• Explosion damaged solids handling systems and
disrupted power
• 10-day outage -> >1M gallons solids
accumulated
• Recovery extended into April 2025, causing
seven (7) effluent permit violations
2025 Example — One Day, Multiple
Effluent Violations
• First 8 months of 2025: 7 effluent permit violations, all from
one day in April
• Cause: Processing stored solids from Dec 2024 explosion
recovery
• One day caused daily, weekly, and monthly exceedances
— (1) Total Suspended Solids 7-day concentration exceedance
— (2) Total Suspended Solids 7-day total pounds exceedance
— (3) Total Suspended Solids monthly concentration exceedance
— (4) CBOD 7-day concentration exceedance
— (5) CBOD 7-day total pounds exceedance
— (6) CBOD monthly concentration exceedance
— (7) CBOD monthly total pounds exceedance
Effluent Violations do not Mean
Environmental Harm
• Some effluent limits are set far below
environmental thresholds for safety
• Not every exceedance means actual harm
to river
• Many effluent permit violations tied to the
same operational issue
During the 2020-2024 Period
the City has:
• Added Plant Manager for daily process
oversight
• Added Industrial Pretreatment Coordinator
for upstream control
• Implemented filamentous control program
• Funded proactive digester cleaning plan
Major Capital Investments Underway
• $7.3M High -Strength Waste Receiving &Storage (design)
• $3M Electrical Controls Modernization (bidding soon)
• $43M Old Mill Road Lift Station &Force Main (under
construction)
• $134M committed through FY2030
2025 Performance to Date
• Only seven (7) effluent permit violations so
far in 2025 — all from one day in April
• No other effluent limit exceedances
What the ACO Means
• One-time penalty, no new requirements
beyond current permit
• Acknowledges most effluent permit
violations caused by exceptional incidents
• Brings closure to the past 5 years
Looking Ahead
• Facility Plan Update for 20-30 year outlook
• Continued investment in people, systems,
and infrastructure
• Goal: Reliable compliance, resiliency,
environmental protection
Closing Message
• Effluent permit violations were isolated and
addressed
• Changes and improvements over the past
five years are already making a difference.
• We are always looking for ways to improve
what we do at the WRRC.
Questions?
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